Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4685

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13052 and 13053 are separated by 305 nucleotides13053 and 13054 are separated by 103 nucleotides mRNA_4684: 13052 - K12603 CNOT6, CCR4 CCR4-NOT transcription complex subunit 6, at 766,790 to 769,374 13052 mRNA_4685: 13053 - K18192 ATP10 mitochondrial ATPase complex subunit ATP10, at 769,680 to 770,905 13053 mRNA_4686: 13054 - HMMPfam-COMPASS (Complex proteins associated with Set1p) component shg1-PF05205, at 771,009 to 771,893 13054

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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769,319 + -1.5
769,452 + -0.3
769,453 + -0.9
769,581 + +0.6
769,581 + -1.2
769,588 - +2.1
769,597 + +1.0
769,610 + +0.4
769,612 - +2.0
769,630 + +0.0
770,946 - +0.1
770,953 + -0.1
770,961 - +1.5
771,381 + 13054 mRNA_4686 0.42 +0.8
771,847 - +0.3

Or see this region's nucleotide sequence