Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4721

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13088 and 13089 are separated by 242 nucleotides13089 and 13090 are separated by 345 nucleotides mRNA_4720: 13088 - K01415 ECE endothelin-converting enzyme, at 851,220 to 854,422 13088 mRNA_4721: 13089 - K10643 CNOT4, NOT4, MOT2 CCR4-NOT transcription complex subunit 4, at 854,665 to 858,103 13089 mRNA_4722: 13090 - K01027 OXCT 3-oxoacid CoA-transferase, at 858,449 to 860,854 13090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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853,825 + 13088 mRNA_4720 0.81 +0.3
853,869 - 13088 mRNA_4720 0.83 -0.2
854,104 + +2.4
854,122 + +0.7
854,250 + +0.2
854,365 + +0.4
854,407 - +2.1
854,410 + +1.2
854,415 - +0.0
854,420 + +0.6
854,528 + -1.0
854,587 - +0.7
854,589 - +0.4
854,593 - +0.7
854,610 + +1.1
854,664 + -0.6
854,743 + +1.8
854,753 - -0.4
854,756 + +1.3
854,884 - -0.7
856,535 + 13089 mRNA_4721 0.54 -0.4
857,781 + +0.3
858,337 + +0.3
858,513 - +0.9
858,848 + 13090 mRNA_4722 0.17 -1.2
858,979 - 13090 mRNA_4722 0.22 +0.2
858,990 + 13090 mRNA_4722 0.22 -0.1
859,010 - 13090 mRNA_4722 0.23 +0.7

Or see this region's nucleotide sequence