Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4737

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13104 and 13105 are separated by 99 nucleotides13105 and 13106 are separated by 68 nucleotides mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888,664 to 889,665 13104 mRNA_4737: 13105 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 889,765 to 891,262 13105 mRNA_4738: 13106 - K01738 cysK cysteine synthase A, at 891,331 to 893,508 13106

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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888,817 - 13104 mRNA_4736 0.15 +2.5
889,039 + 13104 mRNA_4736 0.37 +1.7
889,192 - 13104 mRNA_4736 0.53 -0.1
889,282 - 13104 mRNA_4736 0.62 +1.4
889,296 + 13104 mRNA_4736 0.63 -0.3
889,297 - 13104 mRNA_4736 0.63 +2.0
889,301 - 13104 mRNA_4736 0.64 +0.8
889,319 + 13104 mRNA_4736 0.65 +1.0
889,440 + 13104 mRNA_4736 0.77 +1.1
889,564 - 13104 mRNA_4736 0.90 -2.0
889,586 - -0.4
889,602 - +0.9
889,696 + -0.4
889,703 + -0.2
889,723 + -1.7
889,731 + +1.4
889,738 + +0.9
889,747 + -0.1
889,750 - +0.5
889,751 + +0.5
889,828 + +0.7
889,892 - +1.8
889,920 + 13105 mRNA_4737 0.10 -0.7
889,926 + 13105 mRNA_4737 0.11 -0.9
889,929 - 13105 mRNA_4737 0.11 +1.1
890,026 + 13105 mRNA_4737 0.17 -0.3
890,056 + 13105 mRNA_4737 0.19 -0.8
890,160 + 13105 mRNA_4737 0.26 +0.1
890,323 - 13105 mRNA_4737 0.37 +1.9
890,357 - 13105 mRNA_4737 0.40 +2.9
890,467 + 13105 mRNA_4737 0.47 -0.9
890,483 + 13105 mRNA_4737 0.48 +0.3
890,494 + 13105 mRNA_4737 0.49 -0.2
890,754 - 13105 mRNA_4737 0.66 -0.2
890,755 - 13105 mRNA_4737 0.66 -1.0
890,762 + 13105 mRNA_4737 0.67 +2.5
890,921 - 13105 mRNA_4737 0.77 -0.4
891,485 - -3.9
891,512 - +0.8
891,513 + -1.5
891,513 + -0.1
891,682 - 13106 mRNA_4738 0.16 -1.4
891,683 + 13106 mRNA_4738 0.16 -0.8
891,698 + 13106 mRNA_4738 0.17 -1.3
891,775 + 13106 mRNA_4738 0.20 +0.9
891,792 + 13106 mRNA_4738 0.21 -0.8
891,826 + 13106 mRNA_4738 0.23 -0.0
892,050 - 13106 mRNA_4738 0.33 -0.7
892,060 - 13106 mRNA_4738 0.33 +1.9
892,074 - 13106 mRNA_4738 0.34 -2.1
892,090 + 13106 mRNA_4738 0.35 -1.5
892,202 - 13106 mRNA_4738 0.40 -0.5

Or see this region's nucleotide sequence