Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4741

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13108 and 13109 are separated by 259 nucleotides13109 and 13110 are separated by 278 nucleotides mRNA_4740: 13108 - Hypothetical Protein, at 896,087 to 896,524 13108 mRNA_4741: 13109 - KOG2208 Vigilin, at 896,784 to 901,112 13109 mRNA_4742: 13110 - SUPERFAMILY--SSF52047, at 901,391 to 902,457 13110

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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895,907 + +0.9
896,044 + +0.2
896,046 - +2.3
896,046 - -0.2
896,055 - +1.5
896,176 - 13108 mRNA_4740 0.20 -0.7
896,209 + 13108 mRNA_4740 0.28 -0.0
896,302 + 13108 mRNA_4740 0.49 +0.2
896,308 + 13108 mRNA_4740 0.50 +0.1
896,314 + 13108 mRNA_4740 0.52 +0.2
896,424 - 13108 mRNA_4740 0.77 +0.3
896,447 + 13108 mRNA_4740 0.82 -0.8
896,455 + 13108 mRNA_4740 0.84 -0.5
896,456 - 13108 mRNA_4740 0.84 -0.5
896,475 + 13108 mRNA_4740 0.89 +0.8
896,510 + +1.0
896,579 - -0.3
896,662 - -0.1
896,752 + -0.6
896,770 - +1.1
896,773 + -0.5
896,788 - +1.5
896,907 - +0.0
896,912 + +0.4
897,050 - +0.4
897,052 + -0.5
897,060 - -1.0
897,066 + -0.5
897,072 + -0.2
897,086 + +0.9
897,181 + -0.4
897,207 - -0.0
897,235 + 13109 mRNA_4741 0.10 -0.6
897,339 + 13109 mRNA_4741 0.13 +0.1
897,344 - 13109 mRNA_4741 0.13 +0.1
897,393 - 13109 mRNA_4741 0.14 +0.4
897,400 + 13109 mRNA_4741 0.14 -0.7
897,493 - 13109 mRNA_4741 0.16 -0.6
897,798 + 13109 mRNA_4741 0.23 -0.8
897,886 + 13109 mRNA_4741 0.25 +0.1
897,912 + 13109 mRNA_4741 0.26 -0.5
898,193 - 13109 mRNA_4741 0.33 -0.4
898,201 + 13109 mRNA_4741 0.33 +0.3
898,210 + 13109 mRNA_4741 0.33 +0.9
898,229 - 13109 mRNA_4741 0.33 +2.4
898,395 - 13109 mRNA_4741 0.37 -1.3
898,643 + 13109 mRNA_4741 0.43 -0.0
898,647 - 13109 mRNA_4741 0.43 -0.8
898,656 + 13109 mRNA_4741 0.43 -0.3
898,788 + 13109 mRNA_4741 0.46 -0.8
898,791 - 13109 mRNA_4741 0.46 -1.0
898,795 - 13109 mRNA_4741 0.46 +0.2
899,096 + 13109 mRNA_4741 0.53 +2.9
899,353 - 13109 mRNA_4741 0.59 -0.1
899,465 + 13109 mRNA_4741 0.62 +0.4
899,647 - 13109 mRNA_4741 0.66 -1.5
899,736 - 13109 mRNA_4741 0.68 +0.5
899,784 + 13109 mRNA_4741 0.69 -1.0
899,827 - 13109 mRNA_4741 0.70 +0.7
899,859 + 13109 mRNA_4741 0.71 -0.1
899,989 - 13109 mRNA_4741 0.74 -0.1
900,048 - 13109 mRNA_4741 0.75 -0.1
900,428 + 13109 mRNA_4741 0.84 -0.4
900,595 - 13109 mRNA_4741 0.88 +1.0
900,670 + 13109 mRNA_4741 0.90 -0.6
900,834 - +0.0
900,885 - -0.3
900,892 + +0.0
900,967 - +0.8
901,042 + +1.3
901,180 + +1.2
901,282 - +0.7
901,357 + +0.6
901,862 - 13110 mRNA_4742 0.44 +0.4
901,928 + 13110 mRNA_4742 0.50 +0.8
901,930 - 13110 mRNA_4742 0.51 +0.7

Or see this region's nucleotide sequence