Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4756

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13123 and 13124 are separated by 305 nucleotides13124 and 13125 are separated by 416 nucleotides mRNA_4755: 13123 - Hypothetical Protein, at 934,483 to 935,126 13123 mRNA_4756: 13124 - ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 935,432 to 936,982 13124 mRNA_4757: 13125 - Hypothetical Protein, at 937,399 to 937,793 13125

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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934,633 - 13123 mRNA_4755 0.23 +2.9
934,740 + 13123 mRNA_4755 0.40 +1.3
934,913 + 13123 mRNA_4755 0.67 +0.3
935,004 - 13123 mRNA_4755 0.81 +1.7
935,059 + 13123 mRNA_4755 0.89 +0.5
935,062 + +1.3
935,339 - +0.6
935,339 - +1.1
935,343 + +0.1
935,346 + +0.9
935,400 - -0.6
935,506 - -0.1
935,640 + 13124 mRNA_4756 0.13 -0.3
935,890 - 13124 mRNA_4756 0.30 +1.3
935,987 - 13124 mRNA_4756 0.36 +0.8
936,108 + 13124 mRNA_4756 0.44 -1.4
936,214 - 13124 mRNA_4756 0.50 +0.9
936,241 - 13124 mRNA_4756 0.52 -1.0
936,242 + 13124 mRNA_4756 0.52 +0.0
936,385 + 13124 mRNA_4756 0.61 +0.2
936,534 - 13124 mRNA_4756 0.71 +0.4
936,845 + -0.1
937,028 - +1.2
937,144 + +1.3
937,218 - +0.5
937,242 - +0.8
937,534 - 13125 mRNA_4757 0.34 -2.2
937,538 + 13125 mRNA_4757 0.35 +0.1
937,549 - 13125 mRNA_4757 0.38 -1.7
937,550 + 13125 mRNA_4757 0.38 +1.4
937,632 - 13125 mRNA_4757 0.59 +0.1
937,689 - 13125 mRNA_4757 0.73 -1.3
937,704 + 13125 mRNA_4757 0.77 -0.7
937,712 + 13125 mRNA_4757 0.79 +1.3
937,729 + 13125 mRNA_4757 0.84 +1.7
937,729 + 13125 mRNA_4757 0.84 +1.2
937,736 - 13125 mRNA_4757 0.85 +1.1
937,746 + 13125 mRNA_4757 0.88 +0.2
937,765 - +1.6
937,768 - -0.4
937,873 - +1.6
937,892 - +2.0
937,897 + +1.2
937,908 + +1.9
937,910 + +0.3
937,918 + +1.6

Or see this region's nucleotide sequence