Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4767

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13134 and 13135 are separated by 322 nucleotides13135 and 13136 are separated by 286 nucleotides mRNA_4766: 13134 - BLAST ribonuclease e [Moniliophthora roreri MCA 2997], at 961,767 to 963,160 13134 mRNA_4767: 13135 - KOG1263 Multicopper oxidases, at 963,483 to 966,203 13135 mRNA_4768: 13136 - Hypothetical Protein, at 966,490 to 969,299 13136

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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962,638 + 13134 mRNA_4766 0.62 +1.2
962,672 + 13134 mRNA_4766 0.65 -0.3
962,697 - 13134 mRNA_4766 0.67 +1.0
962,778 + 13134 mRNA_4766 0.73 +0.9
962,798 - 13134 mRNA_4766 0.74 +0.1
963,076 - +0.1
963,338 - +1.4
963,369 - +1.7
963,735 - +0.0
963,757 + 13135 mRNA_4767 0.10 +0.4
964,145 + 13135 mRNA_4767 0.24 +0.1
964,187 - 13135 mRNA_4767 0.26 +0.9
964,191 + 13135 mRNA_4767 0.26 -0.2
964,560 + 13135 mRNA_4767 0.40 +1.0
964,652 + 13135 mRNA_4767 0.43 +0.4
964,719 - 13135 mRNA_4767 0.45 +0.2
964,736 - 13135 mRNA_4767 0.46 +1.2
964,741 + 13135 mRNA_4767 0.46 -0.2
964,792 - 13135 mRNA_4767 0.48 -0.3
964,839 + 13135 mRNA_4767 0.50 +0.1
964,851 + 13135 mRNA_4767 0.50 +0.9
964,891 + 13135 mRNA_4767 0.52 -0.0
964,923 - 13135 mRNA_4767 0.53 +0.1
965,316 - 13135 mRNA_4767 0.67 -0.0
965,386 - 13135 mRNA_4767 0.70 +0.3
965,520 + 13135 mRNA_4767 0.75 -0.7
965,595 - 13135 mRNA_4767 0.78 -1.0
965,611 - 13135 mRNA_4767 0.78 +2.0
965,660 + 13135 mRNA_4767 0.80 +2.5
965,667 - 13135 mRNA_4767 0.80 +1.0
965,667 + 13135 mRNA_4767 0.80 -1.0
965,672 + 13135 mRNA_4767 0.80 +0.5
965,785 - 13135 mRNA_4767 0.85 -0.4
965,799 - 13135 mRNA_4767 0.85 +1.5
965,800 - 13135 mRNA_4767 0.85 -1.3
965,959 + -0.3
966,111 + +0.2
966,126 + +0.8
966,150 + +0.3
966,190 + -0.9
966,243 - +3.1
966,282 - -0.7
966,296 + +0.2
966,443 + +2.1
966,535 - -0.1
966,540 + -2.5
966,863 - 13136 mRNA_4768 0.13 +0.1
967,112 + 13136 mRNA_4768 0.22 +0.6
967,121 + 13136 mRNA_4768 0.22 +0.0
967,121 + 13136 mRNA_4768 0.22 +0.5

Or see this region's nucleotide sequence