Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4793

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13161 and 13162 are separated by 352 nucleotides mRNA_4793: 13161 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 1,025,868 to 1,027,318 13161 mRNA_4794: 13162 - Hypothetical Protein, at 1,027,671 to 1,028,225 13162

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,025,119 - -1.2
1,025,587 - +0.1
1,025,587 - +1.2
1,025,595 - +1.1
1,025,598 - -0.3
1,025,604 + +1.0
1,025,605 + -0.5
1,025,606 - +0.4
1,025,607 + +1.0
1,025,633 - +0.3
1,025,728 + -1.2
1,025,741 + -0.7
1,025,744 + +0.4
1,025,755 + +0.0
1,025,782 - +0.2
1,025,888 + +0.2
1,025,901 + +0.2
1,026,040 - 13161 mRNA_4793 0.12 +0.5
1,026,047 - 13161 mRNA_4793 0.12 +1.0
1,026,050 + 13161 mRNA_4793 0.13 +1.7
1,026,056 - 13161 mRNA_4793 0.13 +1.1
1,026,065 - 13161 mRNA_4793 0.14 -0.2
1,026,210 + 13161 mRNA_4793 0.24 +0.6
1,026,783 + 13161 mRNA_4793 0.63 +1.1
1,026,794 + 13161 mRNA_4793 0.64 +0.5
1,026,934 - 13161 mRNA_4793 0.73 -3.1
1,026,937 + 13161 mRNA_4793 0.74 +0.7
1,027,018 + 13161 mRNA_4793 0.79 -1.0
1,027,573 - -0.0
1,027,796 + 13162 mRNA_4794 0.23 +1.9
1,028,068 + 13162 mRNA_4794 0.72 +0.3
1,028,114 + 13162 mRNA_4794 0.80 +1.1

Or see this region's nucleotide sequence