Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4815

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13182 and 13183 are separated by 51 nucleotides13183 and 13184 are separated by 474 nucleotides mRNA_4814: 13182 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1,074,739 to 1,075,935 13182 mRNA_4815: 13183 - SUPERFAMILY--SSF143575, at 1,075,987 to 1,081,197 13183 mRNA_4816: 13184 - Interpro Protein of unknown function (DUF1777), at 1,081,672 to 1,082,583 13184

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,074,993 - 13182 mRNA_4814 0.21 +0.3
1,075,091 - 13182 mRNA_4814 0.29 +0.3
1,075,115 - 13182 mRNA_4814 0.31 +2.1
1,075,118 + 13182 mRNA_4814 0.32 +1.0
1,075,350 + 13182 mRNA_4814 0.51 +0.3
1,075,520 + 13182 mRNA_4814 0.65 +0.1
1,075,522 + 13182 mRNA_4814 0.65 +3.9
1,075,819 - -0.6
1,076,023 + +0.2
1,076,055 - -0.6
1,076,130 + -0.5
1,076,356 - +0.5
1,076,483 + +0.4
1,076,675 + 13183 mRNA_4815 0.13 +2.9
1,076,804 + 13183 mRNA_4815 0.16 -1.4
1,076,827 - 13183 mRNA_4815 0.16 +0.6
1,076,901 + 13183 mRNA_4815 0.18 -1.1
1,076,939 - 13183 mRNA_4815 0.18 -0.1
1,077,249 - 13183 mRNA_4815 0.24 -0.2
1,077,275 - 13183 mRNA_4815 0.25 +2.3
1,077,362 - 13183 mRNA_4815 0.26 -0.2
1,077,405 - 13183 mRNA_4815 0.27 -1.1
1,077,557 + 13183 mRNA_4815 0.30 +0.7
1,078,207 - 13183 mRNA_4815 0.43 +0.9
1,078,387 - 13183 mRNA_4815 0.46 -2.6
1,078,393 - 13183 mRNA_4815 0.46 +0.1
1,078,445 + 13183 mRNA_4815 0.47 +0.4
1,078,465 - 13183 mRNA_4815 0.48 -0.0
1,078,639 + 13183 mRNA_4815 0.51 +1.6
1,078,692 - 13183 mRNA_4815 0.52 -0.0
1,078,730 + 13183 mRNA_4815 0.53 -1.2
1,078,739 + 13183 mRNA_4815 0.53 -0.0
1,079,062 + 13183 mRNA_4815 0.59 +0.2
1,079,122 - 13183 mRNA_4815 0.60 -0.4
1,079,302 + 13183 mRNA_4815 0.64 +0.0
1,079,567 + 13183 mRNA_4815 0.69 +0.9
1,079,599 - 13183 mRNA_4815 0.69 -0.0
1,079,840 + 13183 mRNA_4815 0.74 +1.7
1,080,279 - 13183 mRNA_4815 0.82 +1.2
1,080,297 + 13183 mRNA_4815 0.83 +0.7
1,080,313 - 13183 mRNA_4815 0.83 -0.3
1,080,326 - 13183 mRNA_4815 0.83 -0.0
1,080,327 + 13183 mRNA_4815 0.83 +0.7
1,080,335 + 13183 mRNA_4815 0.83 +1.6
1,080,361 - 13183 mRNA_4815 0.84 +0.4
1,080,599 - 13183 mRNA_4815 0.89 -2.9
1,080,756 - +1.0
1,080,907 + -1.9
1,080,923 + -0.6
1,081,064 - +1.1
1,081,084 - +0.3
1,081,106 - +0.4
1,081,181 - +0.5
1,081,208 + +0.6
1,081,234 + +0.4
1,081,359 - -0.0
1,081,360 + +0.6
1,081,367 + -0.2

Or see this region's nucleotide sequence