Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4817

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13184 and 13185 are separated by 184 nucleotides13185 and 13186 are separated by 211 nucleotides mRNA_4816: 13184 - Interpro Protein of unknown function (DUF1777), at 1,081,672 to 1,082,583 13184 mRNA_4817: 13185 - K09966 K09966 uncharacterized protein, at 1,082,768 to 1,083,677 13185 mRNA_4818: 13186 - BLAST Putative BTB domain transcription factor [Penicillium..., at 1,083,889 to 1,085,359 13186

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,082,685 + +0.5
1,083,078 - 13185 mRNA_4817 0.34 +1.0
1,083,103 - 13185 mRNA_4817 0.37 +0.2
1,083,210 - 13185 mRNA_4817 0.49 +0.2
1,083,503 + 13185 mRNA_4817 0.81 +0.1
1,083,821 + +0.5
1,084,016 - +0.1
1,084,420 - 13186 mRNA_4818 0.36 -0.7
1,084,426 + 13186 mRNA_4818 0.37 -0.2
1,084,500 - 13186 mRNA_4818 0.42 +0.5
1,084,550 - 13186 mRNA_4818 0.45 -2.2

Or see this region's nucleotide sequence