Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4836

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13203 and 13204 are separated by 310 nucleotides13204 and 13205 are separated by 16 nucleotides mRNA_4835: 13203 - KOG0490 Transcription factor, contains HOX domain, at 1,114,213 to 1,116,199 13203 mRNA_4836: 13204 - BLAST NEK protein kinase [Microbotryum lychnidis-dioicae p1..., at 1,116,510 to 1,117,726 13204 mRNA_4837: 13205 - K20872 NEK2 NIMA (never in mitosis gene a)-related kinase 2, at 1,117,743 to 1,117,911 13205

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,115,564 - 13203 mRNA_4835 0.68 +1.4
1,115,663 + 13203 mRNA_4835 0.73 -0.5
1,115,922 - 13203 mRNA_4835 0.86 -0.6
1,116,036 - -0.3
1,116,679 + 13204 mRNA_4836 0.14 +0.7
1,116,922 + 13204 mRNA_4836 0.34 -0.8
1,117,150 + 13204 mRNA_4836 0.53 +0.3
1,117,689 - +0.4
1,117,998 + +0.0
1,117,998 + +1.6
1,118,302 - +2.6
1,118,602 + -0.5

Or see this region's nucleotide sequence