Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4892

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13259 and 13260 are separated by 268 nucleotides13260 and 13261 are separated by 82 nucleotides mRNA_4891: 13259 - KOG3140 Predicted membrane protein, at 1,235,999 to 1,237,638 13259 mRNA_4892: 13260 - K00915 IPMK, IPK2 inositol-polyphosphate multikinase, at 1,237,907 to 1,239,157 13260 mRNA_4893: 13261 - Hypothetical Protein, at 1,239,240 to 1,240,302 13261

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,237,033 - 13259 mRNA_4891 0.63 +1.8
1,237,280 - 13259 mRNA_4891 0.78 -0.1
1,237,399 - 13259 mRNA_4891 0.85 +1.5
1,237,409 - 13259 mRNA_4891 0.86 +1.6
1,239,168 - +0.5
1,239,180 - -0.1
1,239,197 + +1.5
1,239,916 - 13261 mRNA_4893 0.64 +0.4

Or see this region's nucleotide sequence