Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4904

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13270 and 13271 are separated by 118 nucleotides13271 and 13272 are separated by 143 nucleotides13272 and 13273 are separated by 292 nucleotides mRNA_4902: 13270 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,263,087 to 1,265,892 13270 mRNA_4903: 13271 - BLAST topoisomerase i [Xanthophyllomyces dendrorhous], at 1,266,011 to 1,266,275 13271 mRNA_4904: 13272 - K00367 narB ferredoxin-nitrate reductase, at 1,266,419 to 1,270,865 13272 mRNA_4905: 13273 - KOG2371 Molybdopterin biosynthesis protein, at 1,271,158 to 1,273,410 13273

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,265,512 + 13270 mRNA_4902 0.86 -0.3
1,265,513 + 13270 mRNA_4902 0.86 +0.2
1,265,636 - +1.6
1,265,653 - +1.1
1,265,658 - -0.9
1,265,913 - +1.1
1,266,410 - +0.4
1,266,508 + +0.3
1,266,549 + +1.6
1,266,656 - -1.6
1,266,665 - +0.8
1,266,677 - +0.3
1,267,024 + 13272 mRNA_4904 0.14 +0.8
1,267,117 + 13272 mRNA_4904 0.16 +0.1
1,267,118 - 13272 mRNA_4904 0.16 +2.1
1,267,124 + 13272 mRNA_4904 0.16 +0.5
1,267,127 - 13272 mRNA_4904 0.16 -0.8
1,267,217 + 13272 mRNA_4904 0.18 +1.5
1,267,267 - 13272 mRNA_4904 0.19 +0.3
1,267,324 - 13272 mRNA_4904 0.20 -0.3
1,267,387 - 13272 mRNA_4904 0.22 +1.0
1,267,679 - 13272 mRNA_4904 0.28 +1.4
1,267,865 + 13272 mRNA_4904 0.33 +0.0
1,267,888 + 13272 mRNA_4904 0.33 +0.2
1,267,989 + 13272 mRNA_4904 0.35 +0.5
1,267,992 - 13272 mRNA_4904 0.35 +1.9
1,267,993 + 13272 mRNA_4904 0.35 +0.1
1,268,112 + 13272 mRNA_4904 0.38 -0.7
1,268,145 + 13272 mRNA_4904 0.39 -0.5
1,268,181 - 13272 mRNA_4904 0.40 +1.6
1,268,475 - 13272 mRNA_4904 0.46 +0.7
1,268,571 - 13272 mRNA_4904 0.48 -0.3
1,268,717 + 13272 mRNA_4904 0.52 -1.1
1,268,892 + 13272 mRNA_4904 0.56 +2.1
1,269,028 - 13272 mRNA_4904 0.59 +1.0
1,269,582 - 13272 mRNA_4904 0.71 -0.2
1,269,715 - 13272 mRNA_4904 0.74 +0.2
1,269,792 - 13272 mRNA_4904 0.76 +0.8
1,269,913 - 13272 mRNA_4904 0.79 +2.1
1,270,208 + 13272 mRNA_4904 0.85 +0.5
1,270,467 - -1.3
1,270,752 - +0.4
1,270,761 - +1.4
1,270,769 + -0.2
1,270,871 - +0.2
1,270,939 - +0.8
1,270,957 + -0.0
1,270,961 - -0.0
1,270,961 + -0.9
1,270,971 - +0.6
1,270,981 + +2.1
1,271,024 + -1.3
1,271,028 + -0.7
1,271,038 + +0.4
1,271,075 + +0.9
1,271,085 - +0.6
1,271,202 + +0.4
1,271,215 - +0.0
1,271,782 + 13273 mRNA_4905 0.28 -0.6
1,271,806 - 13273 mRNA_4905 0.29 +0.3
1,271,839 + 13273 mRNA_4905 0.30 +0.4

Or see this region's nucleotide sequence