Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5014

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13382 and 13383 are separated by 480 nucleotides mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1,549,250 to 1,553,078 13382 mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1,553,559 to 1,555,008 13383

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,548,271 + +0.3
1,548,279 + +2.6
1,548,297 - -0.1
1,548,299 - +0.4
1,548,302 + +0.2
1,548,305 - +0.7
1,548,311 - -0.5
1,548,311 - +0.4
1,548,342 + +0.1
1,548,346 - -0.1
1,548,355 - -1.4
1,548,361 + +1.9
1,548,362 + +1.5
1,548,363 - -0.9
1,548,365 + -1.0
1,548,369 - -0.4
1,548,375 + +1.2
1,548,380 - +0.3
1,548,385 - +0.6
1,548,385 - +0.3
1,548,397 - +0.3
1,548,398 - -0.8
1,548,403 + +1.2
1,548,404 - +0.9
1,548,411 + +0.6
1,548,412 - -0.2
1,548,416 + -0.2
1,548,421 - +0.5
1,548,423 + -0.1
1,548,426 + +0.3
1,548,435 + -0.3
1,548,461 - -0.1
1,548,488 + +0.9
1,548,503 - -0.4
1,548,544 + +2.1
1,548,571 + +1.2
1,548,594 - +0.8
1,548,609 - +0.1
1,548,613 + +1.0
1,548,616 - +0.6
1,548,627 - -1.1
1,548,631 - +1.6
1,548,633 - -0.7
1,548,643 - +1.3
1,548,651 + -0.7
1,548,654 - +0.8
1,548,655 - -0.2
1,548,655 + -0.0
1,548,662 - -0.8
1,548,665 + +0.6
1,548,676 - -0.9
1,548,716 + +0.7
1,548,724 + -1.6
1,548,725 - +2.1
1,548,757 - -0.5
1,548,757 + +0.6
1,548,760 + -0.2
1,548,761 - -0.9
1,548,806 - -0.0
1,548,825 + -0.1
1,548,829 - -0.5
1,548,858 + +0.6
1,548,904 - +0.3
1,548,947 - -0.4
1,548,951 + -2.1
1,548,959 + +1.1
1,549,046 - -1.1
1,549,092 - +0.3
1,549,101 + +1.1
1,549,102 - +1.3
1,549,127 + -1.2
1,549,151 + +0.3
1,549,152 - -0.8
1,549,187 + +0.6
1,549,217 - -1.7
1,549,282 - +1.2
1,549,342 - +0.2
1,549,372 - -0.2
1,549,382 - +0.9
1,549,415 - -1.8
1,549,503 + -0.4
1,549,519 - +0.5
1,549,589 - -0.9
1,549,591 - +2.6
1,549,684 - 13382 mRNA_5014 0.11 +1.1
1,549,697 + 13382 mRNA_5014 0.12 +0.4
1,549,941 + 13382 mRNA_5014 0.18 -0.2
1,549,983 + 13382 mRNA_5014 0.19 -0.1
1,550,040 + 13382 mRNA_5014 0.21 +0.1
1,550,040 + 13382 mRNA_5014 0.21 -1.2
1,550,062 + 13382 mRNA_5014 0.21 +0.5
1,550,096 + 13382 mRNA_5014 0.22 +1.1
1,550,140 + 13382 mRNA_5014 0.23 +1.3
1,550,252 - 13382 mRNA_5014 0.26 +0.0
1,550,368 + 13382 mRNA_5014 0.29 +1.4
1,550,372 + 13382 mRNA_5014 0.29 +1.4
1,550,528 + 13382 mRNA_5014 0.33 +1.5
1,550,708 - 13382 mRNA_5014 0.38 +1.1
1,550,801 - 13382 mRNA_5014 0.41 -0.1
1,550,841 + 13382 mRNA_5014 0.42 -0.3
1,550,930 + 13382 mRNA_5014 0.44 -1.1
1,550,965 + 13382 mRNA_5014 0.45 +0.4
1,551,202 - 13382 mRNA_5014 0.51 +0.8
1,551,277 + 13382 mRNA_5014 0.53 -0.1
1,551,289 - 13382 mRNA_5014 0.53 +1.8
1,551,417 - 13382 mRNA_5014 0.57 +1.7
1,551,493 + 13382 mRNA_5014 0.59 -0.4
1,551,626 + 13382 mRNA_5014 0.62 -0.5
1,551,647 - 13382 mRNA_5014 0.63 -1.7
1,551,713 + 13382 mRNA_5014 0.64 +0.6
1,551,813 + 13382 mRNA_5014 0.67 +1.5
1,552,174 - 13382 mRNA_5014 0.76 +1.1
1,552,202 + 13382 mRNA_5014 0.77 +0.1
1,552,350 - 13382 mRNA_5014 0.81 +2.8
1,552,416 - 13382 mRNA_5014 0.83 +0.2
1,552,523 + 13382 mRNA_5014 0.85 +1.5
1,552,690 + 13382 mRNA_5014 0.90 +1.9
1,552,763 - -0.4
1,552,839 - +1.4
1,552,845 + -0.1
1,552,985 - +2.3
1,553,003 + -0.5
1,553,084 - +0.4
1,553,108 + -0.1
1,553,249 + +1.4
1,553,273 + +1.0
1,553,283 - -1.0
1,553,285 + +1.8
1,553,287 + +0.1
1,553,290 - +3.0
1,553,292 - +0.2
1,553,293 - +2.1
1,553,294 + +1.5
1,553,298 + +0.4
1,553,298 + -1.8
1,553,301 - -0.4
1,553,303 - +1.5
1,553,306 + -1.3
1,553,310 + +2.9
1,553,311 + +1.4
1,553,313 + -0.0
1,553,313 - +0.9
1,553,316 - +1.8
1,553,318 - -0.5
1,553,323 + +0.6
1,553,336 + +1.3
1,553,344 + -1.9
1,553,364 - +0.0
1,553,371 + +0.3
1,553,383 - +1.0
1,553,384 + +1.6
1,553,394 + -1.2
1,553,396 - +0.4
1,553,403 + +0.2
1,553,413 + +1.8
1,553,416 - +0.5
1,553,417 + +0.8
1,553,426 - +0.5
1,553,427 + -0.5
1,553,428 - +1.1
1,553,437 + +0.1
1,553,445 + +0.0
1,553,445 + +1.8
1,553,448 + -0.9
1,553,451 + -0.1
1,553,451 - +0.4
1,553,460 + -0.6
1,553,484 + -0.4
1,553,485 - +0.6
1,553,485 - +0.7
1,553,491 - -0.8
1,553,602 - +0.7
1,553,603 + +0.8
1,553,606 - -0.3
1,553,719 + 13383 mRNA_5015 0.11 -1.1
1,553,758 + 13383 mRNA_5015 0.14 +0.3
1,553,772 + 13383 mRNA_5015 0.15 +1.5
1,553,869 + 13383 mRNA_5015 0.21 +0.5

Or see this region's nucleotide sequence