Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5018

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13385 and 13386 are separated by 157 nucleotides13386 and 13387 are separated by 70 nucleotides mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1,557,007 to 1,558,590 13385 mRNA_5018: 13386 - Hypothetical Protein, at 1,558,748 to 1,560,542 13386 mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,560,613 to 1,563,320 13387

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,558,015 - 13385 mRNA_5017 0.64 -0.3
1,558,020 + 13385 mRNA_5017 0.64 -1.7
1,558,591 + +1.7
1,559,316 + 13386 mRNA_5018 0.32 +0.5
1,559,447 - 13386 mRNA_5018 0.39 +0.0
1,559,674 - 13386 mRNA_5018 0.52 -0.8
1,559,882 + 13386 mRNA_5018 0.63 -0.6
1,560,045 + 13386 mRNA_5018 0.72 -3.5
1,560,049 + 13386 mRNA_5018 0.72 -0.4
1,560,318 - 13386 mRNA_5018 0.87 +0.8
1,560,326 - 13386 mRNA_5018 0.88 +0.6
1,560,331 + 13386 mRNA_5018 0.88 +1.0
1,560,346 + 13386 mRNA_5018 0.89 -0.7
1,560,425 + +0.9
1,560,459 - +2.0
1,560,460 - +0.5
1,560,460 + -0.1
1,560,461 + +1.1
1,560,465 + +1.8
1,560,467 - +0.3
1,560,470 - +0.6
1,560,474 - +0.2
1,560,478 - +0.2
1,560,479 - +0.6
1,560,480 + +0.5
1,560,481 + +0.9
1,560,481 + +1.1
1,560,482 - +1.6
1,560,486 + +0.2
1,560,489 - +1.3
1,560,491 - +2.0
1,560,494 + +1.1
1,560,495 - +1.2
1,560,496 + +0.6
1,560,498 + +1.2
1,560,499 + +0.5
1,560,500 - +0.9
1,560,503 + +1.1
1,560,518 + +0.7
1,560,518 + -0.5
1,560,635 - +1.9
1,560,639 + +0.7
1,560,647 + -0.2
1,560,658 + +0.2
1,560,669 + +0.5
1,560,669 - -0.0
1,560,798 + +0.6
1,560,801 - -0.9
1,560,925 - 13387 mRNA_5019 0.12 +0.4
1,560,928 + 13387 mRNA_5019 0.12 -0.3
1,560,939 + 13387 mRNA_5019 0.12 +0.5
1,560,940 + 13387 mRNA_5019 0.12 +1.6
1,560,956 - 13387 mRNA_5019 0.13 -0.7
1,560,963 - 13387 mRNA_5019 0.13 +0.3
1,560,979 - 13387 mRNA_5019 0.14 +0.3
1,561,014 - 13387 mRNA_5019 0.15 -0.3
1,561,096 - 13387 mRNA_5019 0.18 +0.1
1,561,105 + 13387 mRNA_5019 0.18 -0.5
1,561,118 + 13387 mRNA_5019 0.19 -0.0
1,561,124 - 13387 mRNA_5019 0.19 -0.9
1,561,248 - 13387 mRNA_5019 0.23 -0.7
1,561,285 - 13387 mRNA_5019 0.25 +0.4
1,561,380 + 13387 mRNA_5019 0.28 -0.8
1,561,394 + 13387 mRNA_5019 0.29 -0.7
1,561,396 + 13387 mRNA_5019 0.29 +0.6
1,561,411 - 13387 mRNA_5019 0.29 +0.7
1,561,540 - 13387 mRNA_5019 0.34 -0.7

Or see this region's nucleotide sequence