Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5102

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13469 and 13470 are separated by 928 nucleotides13470 and 13471 are separated by 789 nucleotides mRNA_5101: 13469 - K12669 OST3, OST6 oligosaccharyltransferase complex subunit gamma, at 1,751,358 to 1,752,700 13469 mRNA_5102: 13470 - KOG0619 FOG Leucine rich repeat, at 1,753,629 to 1,757,881 13470 mRNA_5103: 13471 - K03099 SOS son of sevenless, at 1,758,671 to 1,763,554 13471

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,753,066 + -0.8
1,753,066 - -0.1
1,753,099 + +0.5
1,753,226 + +1.0
1,753,239 + -1.3
1,753,369 - +0.4
1,753,373 + +3.3
1,753,397 + -1.5
1,753,403 + -0.7
1,753,412 + +0.1
1,753,503 - +0.3
1,753,815 - -0.3
1,753,935 - +0.2
1,754,085 - 13470 mRNA_5102 0.11 +1.5
1,754,092 + 13470 mRNA_5102 0.11 -1.9
1,754,122 - 13470 mRNA_5102 0.12 +0.1
1,754,228 - 13470 mRNA_5102 0.14 +1.3
1,754,241 - 13470 mRNA_5102 0.14 +0.5
1,754,263 - 13470 mRNA_5102 0.15 -3.0
1,754,272 + 13470 mRNA_5102 0.15 -1.4
1,754,690 - 13470 mRNA_5102 0.25 +1.6
1,755,159 + 13470 mRNA_5102 0.36 -0.4
1,755,259 - 13470 mRNA_5102 0.38 +0.8
1,755,483 - 13470 mRNA_5102 0.44 +3.5
1,755,541 + 13470 mRNA_5102 0.45 -0.5
1,755,550 - 13470 mRNA_5102 0.45 -0.6
1,755,553 + 13470 mRNA_5102 0.45 -0.5
1,755,573 - 13470 mRNA_5102 0.46 -0.7
1,755,589 + 13470 mRNA_5102 0.46 -0.5
1,755,855 - 13470 mRNA_5102 0.52 +0.7
1,755,882 + 13470 mRNA_5102 0.53 -1.5
1,755,976 - 13470 mRNA_5102 0.55 -1.3
1,756,272 - 13470 mRNA_5102 0.62 +0.2
1,756,745 - 13470 mRNA_5102 0.73 +0.1
1,756,761 - 13470 mRNA_5102 0.74 -1.3
1,756,906 + 13470 mRNA_5102 0.77 -0.4
1,757,036 - 13470 mRNA_5102 0.80 -0.1
1,757,036 + 13470 mRNA_5102 0.80 +1.5
1,757,194 + 13470 mRNA_5102 0.84 -0.4
1,757,201 - 13470 mRNA_5102 0.84 -0.1
1,757,306 + 13470 mRNA_5102 0.86 +0.2
1,757,312 - 13470 mRNA_5102 0.87 +0.2
1,757,330 - 13470 mRNA_5102 0.87 -0.1
1,757,341 - 13470 mRNA_5102 0.87 -1.0
1,757,454 - 13470 mRNA_5102 0.90 +0.6
1,757,457 + -0.1
1,757,477 + -0.4
1,757,648 - -0.3
1,757,745 - +0.9
1,757,896 + +1.1
1,757,899 - +0.3
1,757,921 - +1.1
1,758,022 - +0.6
1,758,343 + -1.1
1,758,355 - +1.8
1,758,358 + +1.4
1,758,362 - +0.4
1,758,483 + +1.0
1,758,500 - -0.2
1,758,625 - -0.4
1,758,627 + +1.9
1,758,639 + +1.4
1,758,787 - +0.6
1,758,815 + +0.5

Or see this region's nucleotide sequence