Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5123

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13490 and 13491 are separated by 515 nucleotides13491 and 13492 are separated by 149 nucleotides mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1,811,957 to 1,814,516 13490 mRNA_5123: 13491 - K14826 FPR3_4 FK506-binding nuclear protein, at 1,815,032 to 1,816,842 13491 mRNA_5124: 13492 - K13248 PHOSPHO2 pyridoxal phosphate phosphatase PHOSPHO2, at 1,816,992 to 1,818,246 13492

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,814,088 + 13490 mRNA_5122 0.83 +0.8
1,814,091 - 13490 mRNA_5122 0.83 +0.4
1,814,121 - 13490 mRNA_5122 0.85 +1.1
1,814,140 + 13490 mRNA_5122 0.85 +0.3
1,814,304 + +0.3
1,814,422 + +0.5
1,815,304 + 13491 mRNA_5123 0.15 +1.6
1,815,599 - 13491 mRNA_5123 0.31 +0.3
1,815,705 - 13491 mRNA_5123 0.37 +1.1
1,816,014 - 13491 mRNA_5123 0.54 +0.6
1,816,454 - 13491 mRNA_5123 0.79 -0.0
1,816,500 + 13491 mRNA_5123 0.81 -3.1
1,816,609 + 13491 mRNA_5123 0.87 +3.1
1,816,766 - +1.3
1,816,888 + +0.3
1,816,895 + -0.4
1,816,903 - -0.1
1,816,913 - -0.3
1,816,922 + -0.1
1,816,923 - -0.4
1,816,923 - -0.7

Or see this region's nucleotide sequence