Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5150

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13517 and 13518 are separated by 281 nucleotides mRNA_5149: 13517 - Hypothetical Protein, at 18,880 to 20,047 13517 mRNA_5150: 13518 - Hypothetical Protein, at 20,329 to 21,379 13518

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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19,351 + 13517 mRNA_5149 0.40 +1.5
19,369 - 13517 mRNA_5149 0.42 -1.0
19,641 + 13517 mRNA_5149 0.65 +0.2
19,735 + 13517 mRNA_5149 0.73 -0.9
19,763 + 13517 mRNA_5149 0.76 +1.0
19,962 - +0.0
20,503 - 13518 mRNA_5150 0.17 -1.3
20,678 + 13518 mRNA_5150 0.33 +0.0
20,756 - 13518 mRNA_5150 0.41 -0.4
21,003 - 13518 mRNA_5150 0.64 +0.3
21,055 + 13518 mRNA_5150 0.69 +0.6
21,063 - 13518 mRNA_5150 0.70 +0.2
21,380 - +1.4
21,501 + +1.4
21,841 - +0.2
21,918 - +1.1
22,144 + +1.0
22,149 - +1.3
22,252 - +0.7
22,252 - +0.7
22,252 - +0.6
22,252 - +0.2
22,314 + +0.4

Or see this region's nucleotide sequence