Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5159

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13526 and 13527 are separated by 822 nucleotides13527 and 13528 are separated by 545 nucleotides mRNA_5158: 13526 - K15128 MED6 mediator of RNA polymerase II transcription subunit 6, at 39,677 to 40,567 13526 mRNA_5159: 13527 - Hypothetical Protein, at 41,390 to 42,543 13527 mRNA_5160: 13528 - Hypothetical Protein, at 43,089 to 43,847 13528

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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40,687 + -0.0
40,796 - +0.4
40,805 + +0.9
40,938 - -0.9
41,120 + +0.6
41,121 + -0.6
41,147 + +0.6
41,193 + +1.9
41,390 - +0.5
41,408 + +0.7
41,717 + 13527 mRNA_5159 0.28 +0.8
41,812 + 13527 mRNA_5159 0.37 +0.9
41,814 - 13527 mRNA_5159 0.37 +0.0
41,975 + 13527 mRNA_5159 0.51 +1.4
42,119 + 13527 mRNA_5159 0.63 +1.9
42,256 + 13527 mRNA_5159 0.75 +0.7
42,275 + 13527 mRNA_5159 0.77 +0.7
42,286 + 13527 mRNA_5159 0.78 -0.3
42,296 + 13527 mRNA_5159 0.79 -0.2
42,320 - 13527 mRNA_5159 0.81 +0.8
42,555 + +1.3
42,721 - +0.5
43,332 - 13528 mRNA_5160 0.32 +1.4
43,503 - 13528 mRNA_5160 0.55 +0.1

Or see this region's nucleotide sequence