Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5169

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13536 and 13537 are separated by 234 nucleotides13537 and 13538 are separated by 449 nucleotides mRNA_5168: 13536 - SUPERFAMILY--SSF46955, at 60,934 to 62,324 13536 mRNA_5169: 13537 - Hypothetical Protein, at 62,559 to 64,260 13537 mRNA_5170: 13538 - Hypothetical Protein, at 64,710 to 65,306 13538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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61,650 + 13536 mRNA_5168 0.51 +1.1
61,749 + 13536 mRNA_5168 0.59 +0.6
62,410 - +1.5
62,514 + +0.8
62,816 + 13537 mRNA_5169 0.15 -0.4
62,855 - 13537 mRNA_5169 0.17 +0.5
62,930 + 13537 mRNA_5169 0.22 -0.2
62,996 + 13537 mRNA_5169 0.26 -0.5
63,132 + 13537 mRNA_5169 0.34 -0.8
63,254 - 13537 mRNA_5169 0.41 +0.6
63,573 - 13537 mRNA_5169 0.60 -1.4
63,720 + 13537 mRNA_5169 0.68 +0.3
63,868 + 13537 mRNA_5169 0.77 +0.1
63,869 + 13537 mRNA_5169 0.77 +3.0
64,004 - 13537 mRNA_5169 0.85 -0.8
64,030 + 13537 mRNA_5169 0.86 -0.3
64,030 + 13537 mRNA_5169 0.86 +0.4
64,154 - -3.5
64,173 + +0.7
64,180 + -0.5
64,221 + +3.1
64,302 + -0.0
64,315 - +0.3
64,334 - -2.5
64,341 + +0.2
64,343 - +1.0
64,343 + +0.4
64,348 + +1.2
64,358 + +0.3
64,522 + +0.6
65,233 + 13538 mRNA_5170 0.88 -0.4

Or see this region's nucleotide sequence