Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5202

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13569 and 13570 are separated by 307 nucleotides13570 and 13571 are separated by 383 nucleotides mRNA_5201: 13569 - K02304 MET8 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase, at 139,005 to 139,988 13569 mRNA_5202: 13570 - K02874 RP-L14, MRPL14, rplN large subunit ribosomal protein L14, at 140,296 to 141,028 13570 mRNA_5203: 13571 - K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2, at 141,412 to 145,870 13571

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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139,652 + 13569 mRNA_5201 0.66 -0.7
140,064 - -0.9
140,209 - +0.3
140,210 + +0.2
140,213 - +0.0
140,268 + -0.9
141,105 - +0.3
141,231 + +1.5
141,239 - -0.9
141,239 + +0.6
141,240 + +2.0
141,277 - +0.8
141,502 - +0.1
141,505 - +1.1
141,826 + -0.9
141,836 - -0.1
141,847 + +0.1

Or see this region's nucleotide sequence