Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5217

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13583 and 13585 are separated by 315 nucleotides13585 and 13584 are separated by 698 nucleotides mRNA_5215: 13583 - KOG1940 Zn-finger protein, at 166,614 to 167,435 13583 mRNA_5217: 13585 - Hypothetical Protein, at 167,751 to 168,514 13585 mRNA_5216: 13584 - K04648 DCTN1 dynactin 1, at 169,213 to 174,465 13584

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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166,755 + 13583 mRNA_5215 0.17 +0.5
167,243 + 13583 mRNA_5215 0.77 +0.1
167,536 - +2.4
167,984 + 13585 mRNA_5217 0.30 +0.1
168,036 + 13585 mRNA_5217 0.37 -0.2
168,141 - 13585 mRNA_5217 0.51 +0.4
168,170 - 13585 mRNA_5217 0.55 +0.5
168,417 - 13585 mRNA_5217 0.87 -1.1
168,429 - 13585 mRNA_5217 0.89 +0.1
168,740 + +0.6
168,816 + +1.1
168,905 - -0.4
168,909 - -0.3
169,361 + +0.5
169,364 - +2.2

Or see this region's nucleotide sequence