Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5253

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13620 and 13621 are separated by 380 nucleotides13621 and 13622 are separated by 716 nucleotides mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276,429 to 278,610 13620 mRNA_5253: 13621 - Hypothetical Protein, at 278,991 to 279,822 13621 mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280,539 to 283,748 13622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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278,541 - +0.3
278,582 - +0.0
278,711 + +2.0
279,552 - 13621 mRNA_5253 0.67 -1.5
279,561 - 13621 mRNA_5253 0.69 -0.9
279,710 - 13621 mRNA_5253 0.86 +0.7
279,710 - 13621 mRNA_5253 0.86 +0.4
279,719 + 13621 mRNA_5253 0.88 -0.5
279,839 - +0.9
279,864 + +0.6
279,872 - -0.1
279,886 + +2.9
279,892 + -1.0
279,893 - +0.5
279,971 + -1.6
280,091 + -0.9
280,107 + +1.4
280,131 + -0.8
280,157 + +0.4
280,324 - +1.5
280,492 + +1.8
280,706 + -0.2

Or see this region's nucleotide sequence