Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5272

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13639 and 13640 are separated by 216 nucleotides13640 and 13641 are separated by 438 nucleotides mRNA_5271: 13639 - K11841 USP10, UBP3 ubiquitin carboxyl-terminal hydrolase 10, at 327,225 to 330,329 13639 mRNA_5272: 13640 - K02731 PSMA7 20S proteasome subunit alpha 4, at 330,546 to 332,091 13640 mRNA_5273: 13641 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 332,530 to 334,206 13641

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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329,771 - 13639 mRNA_5271 0.82 -2.1
330,385 + -0.3
330,972 - 13640 mRNA_5272 0.28 -0.2
332,275 - +1.2
332,380 - -2.3
332,534 - -1.0
332,644 + -0.3
332,644 - +0.7
332,679 - +0.7
332,740 + 13641 mRNA_5273 0.13 +0.4
332,749 + 13641 mRNA_5273 0.13 -1.1
332,849 + 13641 mRNA_5273 0.19 +0.4
333,070 + 13641 mRNA_5273 0.32 -0.1

Or see this region's nucleotide sequence