Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5298

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13666 and 13667 are separated by 335 nucleotides mRNA_5298: 13666 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 386,412 to 388,025 13666 mRNA_5299: 13667 - BLAST RNA polymerase sigma factor, sigma-70 family [Rho..., at 388,361 to 391,277 13667

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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385,495 + -0.0
385,616 + -1.2
385,626 - +0.3
385,626 - -0.4
385,640 - -0.1
385,647 - +0.5
385,648 + +0.9
385,662 + +2.0
387,997 + +2.3
388,120 - -0.2
388,124 - -0.9
388,270 + +0.9
388,273 + +1.6
388,273 + -0.7
388,276 + +0.6
388,281 + +2.1
388,286 - +2.4
388,286 + +2.1
388,374 - +0.1
388,400 + +0.1
388,417 - +0.1
388,434 + +1.1
388,444 + -0.6
388,462 + +0.6
388,479 - +1.5
388,719 - 13667 mRNA_5299 0.12 +0.3
388,869 + 13667 mRNA_5299 0.17 -1.2

Or see this region's nucleotide sequence