Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5299

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13666 and 13667 are separated by 335 nucleotides13667 and 13668 are separated by 550 nucleotides mRNA_5298: 13666 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 386,412 to 388,025 13666 mRNA_5299: 13667 - BLAST RNA polymerase sigma factor, sigma-70 family [Rho..., at 388,361 to 391,277 13667 mRNA_5300: 13668 - K03023 RPC3, POLR3C DNA-directed RNA polymerase III subunit RPC3, at 391,828 to 394,452 13668

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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387,997 + +2.3
388,120 - -0.2
388,124 - -0.9
388,270 + +0.9
388,273 + +1.6
388,273 + -0.7
388,276 + +0.6
388,281 + +2.1
388,286 - +2.4
388,286 + +2.1
388,374 - +0.1
388,400 + +0.1
388,417 - +0.1
388,434 + +1.1
388,444 + -0.6
388,462 + +0.6
388,479 - +1.5
388,719 - 13667 mRNA_5299 0.12 +0.3
388,869 + 13667 mRNA_5299 0.17 -1.2
389,089 + 13667 mRNA_5299 0.25 -0.0
389,141 + 13667 mRNA_5299 0.27 +0.0
389,331 + 13667 mRNA_5299 0.33 +0.3
389,498 + 13667 mRNA_5299 0.39 +0.5
389,499 + 13667 mRNA_5299 0.39 +0.9
391,267 + +2.2
391,475 - +3.5
391,491 - +1.0
391,786 + +1.3

Or see this region's nucleotide sequence