Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5310

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13677 and 13678 are separated by 410 nucleotides13678 and 13679 are separated by 303 nucleotides mRNA_5309: 13677 - KOG0628 Aromatic-L-amino-acid/L-histidine decarboxylase, at 423,149 to 425,154 13677 mRNA_5310: 13678 - Hypothetical Protein, at 425,565 to 427,309 13678 mRNA_5311: 13679 - Hypothetical Protein, at 427,613 to 428,578 13679

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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424,583 + 13677 mRNA_5309 0.71 +0.8
424,906 - 13677 mRNA_5309 0.88 +2.2
425,007 + +1.9
425,019 + +0.3
425,024 - -0.7
425,028 + +1.5
425,144 - +0.4
425,147 - +0.5
425,300 - -0.0
425,308 - -0.0
425,312 - +1.5
425,312 - +0.2
425,314 - +1.9
425,323 - -0.2
425,324 + -0.2
425,328 + +1.3
425,328 + +0.2
425,328 + +0.9
425,338 - -0.3
425,341 + -0.2
425,341 - +0.1
425,352 - +1.2
425,468 + -1.2
425,475 + +0.5
425,477 + -0.2
425,484 + -0.2
425,486 + -0.7
425,498 + -1.2
425,498 + -0.8
425,502 + +0.5
425,620 + -1.1
425,640 + +0.2
425,642 + +0.7
425,648 - -0.0
425,902 + 13678 mRNA_5310 0.19 -0.3
425,939 + 13678 mRNA_5310 0.21 -0.2
426,061 + 13678 mRNA_5310 0.28 +3.3
426,640 + 13678 mRNA_5310 0.62 -0.2
426,642 - 13678 mRNA_5310 0.62 +0.6
426,709 + 13678 mRNA_5310 0.66 +0.6
427,160 + +1.5
427,240 - +1.5
427,241 + +1.2
427,261 + -0.2
427,314 - -0.1
427,323 - -0.2
427,361 - +0.7
427,364 - +2.7
427,388 - +1.0
427,472 + +1.8
427,487 - +1.2
427,513 + +0.9
427,529 - -0.4
427,548 + -0.2
427,587 - -1.2
427,604 + -1.0
427,620 - -0.0
427,628 - +0.3
427,665 - +0.7
427,667 + -1.0
427,671 + +0.4
427,710 + 13679 mRNA_5311 0.10 +1.9
427,744 + 13679 mRNA_5311 0.14 +0.3
427,843 + 13679 mRNA_5311 0.24 +0.2
428,068 - 13679 mRNA_5311 0.47 +0.5
428,075 + 13679 mRNA_5311 0.48 +0.9
428,106 - 13679 mRNA_5311 0.51 +0.6
428,203 + 13679 mRNA_5311 0.61 -0.2
428,218 - 13679 mRNA_5311 0.63 -0.0
428,251 - 13679 mRNA_5311 0.66 -1.4

Or see this region's nucleotide sequence