Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5451

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13819 and 13820 are separated by 486 nucleotides mRNA_5451: 13819 - Hypothetical Protein, at 122,441 to 123,785 13819 mRNA_5452: 13820 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 124,272 to 125,754 13820

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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121,539 - +0.5
121,770 - +0.6
121,785 + -0.1
121,938 + +0.9
122,078 - -1.2
122,080 + -1.4
122,093 - +1.3
122,096 - -1.2
122,116 - -1.1
122,671 + 13819 mRNA_5451 0.17 +0.7
122,692 + 13819 mRNA_5451 0.19 +0.3
123,123 + 13819 mRNA_5451 0.51 -0.1
123,227 + 13819 mRNA_5451 0.58 +0.9
123,251 - 13819 mRNA_5451 0.60 +0.6
123,309 - 13819 mRNA_5451 0.65 -0.7
123,346 + 13819 mRNA_5451 0.67 +0.3
123,348 + 13819 mRNA_5451 0.67 -0.3
123,370 - 13819 mRNA_5451 0.69 +0.2
123,379 - 13819 mRNA_5451 0.70 +0.4
123,385 - 13819 mRNA_5451 0.70 +0.3
123,400 - 13819 mRNA_5451 0.71 +0.1
123,518 + 13819 mRNA_5451 0.80 +0.9
123,522 + 13819 mRNA_5451 0.80 +0.3
123,525 + 13819 mRNA_5451 0.81 +2.7
123,533 + 13819 mRNA_5451 0.81 -0.3
123,534 + 13819 mRNA_5451 0.81 +1.6
123,535 + 13819 mRNA_5451 0.81 +1.6
123,538 - 13819 mRNA_5451 0.82 +0.9
123,545 + 13819 mRNA_5451 0.82 +1.0
123,549 - 13819 mRNA_5451 0.82 +0.2
123,559 + 13819 mRNA_5451 0.83 +0.7
123,566 - 13819 mRNA_5451 0.84 +2.5
123,579 - 13819 mRNA_5451 0.85 +0.2
123,597 - 13819 mRNA_5451 0.86 -1.2
123,626 - 13819 mRNA_5451 0.88 +0.4
123,673 - -0.8
123,674 - +0.3
123,675 + +0.3
123,677 + +2.0
123,678 + -0.1
123,681 - +0.2
123,691 + +0.5
123,703 + +2.7
123,716 - -0.1
123,774 + -0.8
123,813 - +1.1
123,827 - -0.9
123,834 + -0.0
123,836 - -0.5
123,836 - -0.8
123,841 + -0.1
123,857 + +1.0
123,862 + -0.4
123,864 + +3.4
123,869 - +0.0
123,877 + -0.9
123,879 + +1.6
123,884 - -0.2
123,929 + -0.2
123,931 + -1.4
123,943 - +0.5
123,948 + -0.7
123,978 + +0.7
123,978 + +0.0
123,981 - -0.6
123,992 + -0.0
123,995 + -0.4
124,018 - +0.1
124,033 - +0.1
124,052 + +0.2
124,106 - -1.1
124,114 - +0.5
124,115 - +2.2
124,118 + -0.2
124,120 + -0.0
124,122 + -0.4
124,124 - +1.5
124,127 - +1.1
124,129 + -0.1
124,132 - +0.6
124,133 - +0.5
124,133 - +0.5
124,134 - -0.4
124,134 - -0.1
124,136 - +1.8
124,136 - +2.8
124,138 + +1.9
124,142 - +1.1
124,143 - -0.4
124,144 + +1.1
124,144 + +1.3
124,145 + +0.7
124,145 - -0.2
124,146 + +0.8
124,151 - +1.2
124,151 - +0.5
124,152 - +0.8
124,152 + -1.0
124,155 + +0.6
124,162 - -0.1
124,165 - +0.5
124,165 - -0.6
124,183 + -0.1
124,202 + -0.4
124,204 + +1.9
124,244 + +0.9
124,303 + +0.3
124,311 - +1.9
124,347 + -0.4
124,397 - -0.3
124,416 + +0.8
124,441 + 13820 mRNA_5452 0.11 -2.0
124,462 + 13820 mRNA_5452 0.13 -0.2
124,489 + 13820 mRNA_5452 0.15 +1.4
124,494 - 13820 mRNA_5452 0.15 -0.9
124,629 + 13820 mRNA_5452 0.24 +1.2
124,631 + 13820 mRNA_5452 0.24 +0.4
124,637 - 13820 mRNA_5452 0.25 +2.8

Or see this region's nucleotide sequence