Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5476

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13843 and 13844 are separated by 438 nucleotides13844 and 13845 are separated by 269 nucleotides mRNA_5475: 13843 - KOG0084 GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins, at 181,752 to 183,361 13843 mRNA_5476: 13844 - KOG4719 Nuclear pore complex protein, at 183,800 to 188,314 13844 mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188,584 to 192,714 13845

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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182,802 - 13843 mRNA_5475 0.65 -0.9
182,830 - 13843 mRNA_5475 0.67 +0.0
182,995 + 13843 mRNA_5475 0.77 +0.2
183,144 - 13843 mRNA_5475 0.86 +1.8
183,252 - +2.2
183,391 + +0.6
183,405 - +0.8
183,427 - +0.1
183,565 - +0.7
184,182 + +0.5
184,182 + +1.1
184,300 + 13844 mRNA_5476 0.11 +2.6
184,480 + 13844 mRNA_5476 0.15 +1.4
184,578 - 13844 mRNA_5476 0.17 -0.7
184,578 - 13844 mRNA_5476 0.17 -0.6
186,691 - 13844 mRNA_5476 0.64 -0.2
187,006 + 13844 mRNA_5476 0.71 +0.5
188,366 + -0.6
188,373 + -0.1
188,390 - +0.2
188,512 - +3.3
188,521 + +1.6
188,794 - -0.2

Or see this region's nucleotide sequence