Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5536

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13903 and 13904 are separated by 251 nucleotides13904 and 13905 are separated by 134 nucleotides mRNA_5535: 13903 - K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14, at 318,348 to 322,384 13903 mRNA_5536: 13904 - Hypothetical Protein, at 322,636 to 323,526 13904 mRNA_5537: 13905 - K14766 NOP14, UTP2 nucleolar protein 14, at 323,661 to 327,159 13905

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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321,660 + 13903 mRNA_5535 0.82 +2.0
321,706 - 13903 mRNA_5535 0.83 -0.4
321,938 - 13903 mRNA_5535 0.89 +0.2
321,950 - 13903 mRNA_5535 0.89 +0.6
322,217 + +2.2
322,388 + +0.0
322,567 + +0.1
322,859 + 13904 mRNA_5536 0.25 +0.7
323,160 + 13904 mRNA_5536 0.59 +1.2
323,280 - 13904 mRNA_5536 0.72 +2.1
323,479 - +1.0

Or see this region's nucleotide sequence