Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5537

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13904 and 13905 are separated by 134 nucleotides13905 and 13906 are separated by 292 nucleotides mRNA_5536: 13904 - Hypothetical Protein, at 322,636 to 323,526 13904 mRNA_5537: 13905 - K14766 NOP14, UTP2 nucleolar protein 14, at 323,661 to 327,159 13905 mRNA_5538: 13906 - Hypothetical Protein, at 327,452 to 328,556 13906

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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322,859 + 13904 mRNA_5536 0.25 +0.7
323,160 + 13904 mRNA_5536 0.59 +1.2
323,280 - 13904 mRNA_5536 0.72 +2.1
323,479 - +1.0
325,675 + 13905 mRNA_5537 0.58 -0.3
327,182 + -0.6
327,240 + +0.5
327,241 - +0.5
327,243 + -0.4
327,492 + +0.4
327,519 - -0.2
327,546 - +0.2
327,657 - 13906 mRNA_5538 0.19 +0.6
327,823 + 13906 mRNA_5538 0.34 -1.7
327,904 - 13906 mRNA_5538 0.41 -1.4
327,938 - 13906 mRNA_5538 0.44 -0.1
327,961 + 13906 mRNA_5538 0.46 +1.9
327,963 - 13906 mRNA_5538 0.46 +0.4
328,079 - 13906 mRNA_5538 0.57 -0.1
328,079 - 13906 mRNA_5538 0.57 -0.4
328,138 - 13906 mRNA_5538 0.62 +0.8

Or see this region's nucleotide sequence