Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5538

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13905 and 13906 are separated by 292 nucleotides13906 and 13907 are separated by 299 nucleotides mRNA_5537: 13905 - K14766 NOP14, UTP2 nucleolar protein 14, at 323,661 to 327,159 13905 mRNA_5538: 13906 - Hypothetical Protein, at 327,452 to 328,556 13906 mRNA_5539: 13907 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 328,856 to 330,220 13907

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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327,182 + -0.6
327,240 + +0.5
327,241 - +0.5
327,243 + -0.4
327,492 + +0.4
327,519 - -0.2
327,546 - +0.2
327,657 - 13906 mRNA_5538 0.19 +0.6
327,823 + 13906 mRNA_5538 0.34 -1.7
327,904 - 13906 mRNA_5538 0.41 -1.4
327,938 - 13906 mRNA_5538 0.44 -0.1
327,961 + 13906 mRNA_5538 0.46 +1.9
327,963 - 13906 mRNA_5538 0.46 +0.4
328,079 - 13906 mRNA_5538 0.57 -0.1
328,079 - 13906 mRNA_5538 0.57 -0.4
328,138 - 13906 mRNA_5538 0.62 +0.8
328,245 + 13906 mRNA_5538 0.72 -1.9
328,251 + 13906 mRNA_5538 0.72 -0.3
328,270 - 13906 mRNA_5538 0.74 +1.8
328,524 - +0.3
328,535 + -2.2
328,537 + +0.4
328,540 - -1.0
328,546 - +2.3
328,690 + +0.0
329,242 + 13907 mRNA_5539 0.28 +1.0
329,267 - 13907 mRNA_5539 0.30 +0.0

Or see this region's nucleotide sequence