Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5580

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13947 and 13948 are separated by 791 nucleotides13948 and 13949 are separated by 760 nucleotides mRNA_5579: 13947 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 422,272 to 423,518 13947 mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424,310 to 425,729 13948 mRNA_5581: 13949 - KOG1198 Zinc-binding oxidoreductase, at 426,490 to 430,753 13949

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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423,433 + +2.2
423,433 + -0.3
423,474 - +1.1
423,475 - +0.7
423,634 + -1.2
423,741 - -0.2
423,761 + -0.7
423,761 + +1.0
423,771 + +0.2
425,746 + +1.7
425,965 + -0.2
425,976 + -0.3
425,989 + +0.3
426,023 - +0.8
426,063 + +0.9
426,089 + +3.1
426,092 - +1.4
426,101 + +0.3
426,108 - +0.2
426,117 - -0.3
426,117 - -0.0
426,117 + -1.6
426,120 - +0.8
426,126 - +1.2
426,129 - +0.2
426,133 + +0.5
426,141 - +1.5
426,142 - +0.3
426,146 + -0.6
426,147 - -0.3
426,150 + +1.2
426,150 - +1.1
426,156 + -2.1
426,157 - +0.1
426,161 - +0.2
426,163 + -0.5
426,166 + -0.2
426,171 - -1.2
426,177 + -0.8
426,200 + +0.6
426,305 - -0.4
426,313 - -0.5
426,331 + +0.0
426,352 + -1.1
426,465 - +0.4
426,491 + -0.5
426,494 - -0.3
426,619 + +1.3
426,646 - +0.5

Or see this region's nucleotide sequence