Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5588

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13955 and 13956 are separated by 410 nucleotides mRNA_5587: 13955 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 442,460 to 444,934 13955 mRNA_5588: 13956 - K04646 CLTC clathrin heavy chain, at 445,345 to 451,026 13956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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444,496 - 13955 mRNA_5587 0.82 +1.8
444,601 - 13955 mRNA_5587 0.87 +0.9
444,632 + 13955 mRNA_5587 0.88 +1.7
444,654 + 13955 mRNA_5587 0.89 +1.4
444,670 - 13955 mRNA_5587 0.89 -0.4
444,952 - +1.4
445,119 - -0.0
445,124 + -0.3
445,146 + +2.7
445,235 + -2.4
445,249 - -0.7
445,277 - +2.6
445,586 - -0.2
451,077 + -0.2
451,810 + -2.6
451,819 - -1.3
451,822 - +1.4
451,976 + +2.1
451,982 - +1.2
452,008 - -0.1

Or see this region's nucleotide sequence