Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5610

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13977 and 13978 are separated by 88 nucleotides13978 and 13979 are separated by 266 nucleotides mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504,670 to 507,396 13978 mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507,663 to 510,497 13979

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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503,891 + 13977 mRNA_5609 0.71 +2.7
503,903 + 13977 mRNA_5609 0.71 +2.9
504,176 - 13977 mRNA_5609 0.83 -1.2
504,191 - 13977 mRNA_5609 0.83 +1.3
504,191 - 13977 mRNA_5609 0.83 +1.2
504,222 + 13977 mRNA_5609 0.85 +0.3
504,286 + 13977 mRNA_5609 0.87 -0.6
505,095 + 13978 mRNA_5610 0.16 +2.4
505,536 + 13978 mRNA_5610 0.32 +0.7
505,650 - 13978 mRNA_5610 0.36 +0.2
505,711 - 13978 mRNA_5610 0.38 +1.4
505,801 + 13978 mRNA_5610 0.41 -0.5
505,801 + 13978 mRNA_5610 0.41 -0.2
505,805 - 13978 mRNA_5610 0.42 +2.5
505,811 + 13978 mRNA_5610 0.42 -0.3
506,099 + 13978 mRNA_5610 0.52 +1.9
506,109 - 13978 mRNA_5610 0.53 +1.7
506,111 - 13978 mRNA_5610 0.53 +0.5
506,136 + 13978 mRNA_5610 0.54 -0.9
506,372 + 13978 mRNA_5610 0.62 -0.0
506,443 - 13978 mRNA_5610 0.65 +3.0
506,565 + 13978 mRNA_5610 0.69 +2.4
506,820 + 13978 mRNA_5610 0.79 +0.5
506,991 + 13978 mRNA_5610 0.85 -1.6
507,001 + 13978 mRNA_5610 0.85 +1.2
507,269 - +0.4
507,284 - +0.0
507,292 + +0.1
507,378 + -0.1
507,570 - +0.0
507,594 + +1.6
507,611 - +0.3
508,178 - 13979 mRNA_5611 0.18 +0.5

Or see this region's nucleotide sequence