Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5612

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13979 and 13980 are separated by 149 nucleotides13980 and 13981 are separated by 247 nucleotides mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507,663 to 510,497 13979 mRNA_5612: 13980 - K14213 PEPD Xaa-Pro dipeptidase, at 510,647 to 512,391 13980 mRNA_5613: 13981 - K03035 PSMD12, RPN5 26S proteasome regulatory subunit N5, at 512,639 to 514,652 13981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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510,099 + 13979 mRNA_5611 0.86 +0.8
510,378 - -0.3
510,716 - +0.0
511,012 - 13980 mRNA_5612 0.21 +0.1
511,029 - 13980 mRNA_5612 0.22 +0.3
511,464 - 13980 mRNA_5612 0.47 +1.2
511,636 - 13980 mRNA_5612 0.57 +0.6
512,057 - 13980 mRNA_5612 0.81 +0.4
512,192 + 13980 mRNA_5612 0.89 -0.7
512,215 - 13980 mRNA_5612 0.90 +2.3
512,345 - +0.1
512,345 - +1.5
512,352 + +0.4
512,372 - +1.5
512,375 + -1.9
512,519 - +1.5
512,533 - +1.9

Or see this region's nucleotide sequence