Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5615

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13982 and 13983 are separated by 436 nucleotides13983 and 13984 are separated by 550 nucleotides mRNA_5614: 13982 - BLAST Zinc finger protein DZIP1L [Rhizoctonia solani], at 515,411 to 519,507 13982 mRNA_5615: 13983 - HMMPfam-GRF zinc finger-PF06839, at 519,944 to 520,866 13983 mRNA_5616: 13984 - HMMPfam-GRF zinc finger-PF06839, at 521,417 to 522,202 13984

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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518,970 - 13982 mRNA_5614 0.87 -0.5
519,032 - 13982 mRNA_5614 0.88 +1.6
519,308 + +0.2
519,418 + +1.2
519,634 + +0.3
519,928 + +0.1
520,219 - 13983 mRNA_5615 0.30 -0.7
520,389 + 13983 mRNA_5615 0.48 -0.3
520,442 - 13983 mRNA_5615 0.54 +0.4
521,414 - +1.0
521,634 - 13984 mRNA_5616 0.28 -0.0

Or see this region's nucleotide sequence