Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5703

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14070 and 14071 are separated by 832 nucleotides mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721,912 to 723,848 14070 mRNA_5703: 14071 - KOG1289 Amino acid transporters, at 724,681 to 726,988 14071

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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723,872 - -0.4
724,175 - -0.7
724,196 + -1.3
724,307 - +1.6
724,316 - -0.3
724,325 - -1.0
724,329 - +0.2
724,339 + +0.5
724,352 + -0.1
724,370 + +1.5
724,447 + +1.1
724,455 - -1.1
724,479 + +0.8
724,588 + -0.5
724,629 - +0.2
724,634 - -1.0
724,635 + +1.2
724,640 - +0.2
724,641 + +0.1
724,642 + +1.7
724,646 + +1.9
724,646 + -0.3
724,776 - -1.2
724,778 - +0.2
724,780 - +0.3
724,797 - +0.3
724,927 + 14071 mRNA_5703 0.11 +0.5
725,043 + 14071 mRNA_5703 0.16 +0.0
725,243 - 14071 mRNA_5703 0.24 +1.0
725,244 - 14071 mRNA_5703 0.24 +0.0
725,571 - 14071 mRNA_5703 0.39 +0.9
725,673 - 14071 mRNA_5703 0.43 -0.2
725,807 - 14071 mRNA_5703 0.49 -0.7
725,960 - 14071 mRNA_5703 0.55 +0.9
725,963 - 14071 mRNA_5703 0.56 +1.2
725,974 + 14071 mRNA_5703 0.56 +0.0
726,049 - 14071 mRNA_5703 0.59 -0.5
726,655 - 14071 mRNA_5703 0.86 -1.4
726,690 - 14071 mRNA_5703 0.87 -0.1
726,969 + -0.1
727,144 - +0.6
727,162 + +1.5
727,230 + +0.9
727,259 - +1.0
727,275 - +2.0
727,289 - +1.6
727,295 + +2.0
727,317 - -0.2
727,318 + +1.0
727,319 + -0.6
727,338 + -0.9
727,348 - +0.1
727,349 + +0.2
727,359 + +0.9
727,468 - -0.6
727,473 + +1.3
727,483 - +0.1
727,504 + +1.6
727,518 - +1.6
727,530 + +3.5
727,538 + +1.2
727,608 - +0.5
727,696 - -0.5
727,697 - +0.7
727,728 + -0.3
727,736 + +2.7
727,745 + -0.2
727,749 + -0.4
727,866 - +0.4
727,875 + +0.7
727,891 + +0.8
727,892 - +0.8
727,903 - +0.3

Or see this region's nucleotide sequence