Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5789

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14156 and 14157 are separated by 89 nucleotides14157 and 14158 are separated by 96 nucleotides mRNA_5788: 14156 - HMMPfam-Ribosome biogenesis protein SLX9-PF15341, at 943,585 to 944,558 14156 mRNA_5789: 14157 - KOG2859 DNA repair protein, member of the recA/RAD51 family, at 944,648 to 945,829 14157 mRNA_5790: 14158 - K01054 MGLL acylglycerol lipase, at 945,926 to 947,446 14158

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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944,568 + +0.9
944,570 - -0.4
944,673 + +1.0
944,707 - +1.3
944,895 + 14157 mRNA_5789 0.21 -0.4
945,101 + 14157 mRNA_5789 0.38 +0.2
945,139 - 14157 mRNA_5789 0.42 +0.1
945,186 - 14157 mRNA_5789 0.46 -0.0
945,252 + 14157 mRNA_5789 0.51 +0.9
945,329 + 14157 mRNA_5789 0.58 +0.0
945,390 + 14157 mRNA_5789 0.63 -1.7
945,579 + 14157 mRNA_5789 0.79 +0.7
945,596 - 14157 mRNA_5789 0.80 -0.4
945,689 - 14157 mRNA_5789 0.88 +1.1
945,741 - -0.5
945,745 - +0.1
945,750 - -0.0
946,005 - -1.7
946,033 + +0.6
946,163 - 14158 mRNA_5790 0.16 -0.4
946,196 + 14158 mRNA_5790 0.18 -1.8
946,604 - 14158 mRNA_5790 0.45 +0.6
946,774 + 14158 mRNA_5790 0.56 +1.3
946,792 - 14158 mRNA_5790 0.57 -0.5

Or see this region's nucleotide sequence