Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5796

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14163 and 14164 overlap by 20 nucleotides mRNA_5795: 14163 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 957,855 to 959,394 14163 mRNA_5796: 14164 - BLAST Protein of unknown function DUF4598 [Xanthophyllomyce..., at 959,375 to 960,569 14164

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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958,534 - 14163 mRNA_5795 0.44 -0.4
958,935 + 14163 mRNA_5795 0.70 -0.6
959,260 - +0.8
959,399 + -0.1
959,657 - 14164 mRNA_5796 0.24 -0.1
959,967 - 14164 mRNA_5796 0.50 +0.4
960,321 - 14164 mRNA_5796 0.79 +2.1
960,416 - 14164 mRNA_5796 0.87 -0.8
960,549 - +1.9
960,551 - -1.7
960,579 - +0.1
960,583 + +0.3
960,585 - +1.3
960,586 - +1.1
960,730 - +0.3
960,738 + -0.1
960,871 - -0.0
961,133 + +1.2
961,192 + -0.6
961,324 + +0.8

Or see this region's nucleotide sequence