Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5811

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14178 and 14179 are separated by 640 nucleotides14179 and 14180 are separated by 255 nucleotides mRNA_5810: 14178 - K02730 PSMA6 20S proteasome subunit alpha 1, at 990,467 to 991,553 14178 mRNA_5811: 14179 - K01599 hemE, UROD uroporphyrinogen decarboxylase, at 992,194 to 993,567 14179 mRNA_5812: 14180 - K02831 RAD53 ser/thr/tyr protein kinase RAD53, at 993,823 to 996,800 14180

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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991,247 + 14178 mRNA_5810 0.72 +0.3
991,962 + -1.0
991,978 - +0.6
991,981 + +0.6
991,981 - +0.9
991,986 + +0.6
992,115 - +0.8
992,127 - -0.6
993,598 - +0.2
993,609 - +1.5
993,615 - +0.7
993,711 - +1.7
993,781 - -0.9
993,785 - +1.3
993,901 + +0.8
993,902 - -0.3
993,906 - -0.1
993,925 - +0.6
994,060 + +0.2
994,100 + +0.6
994,138 + 14180 mRNA_5812 0.11 -1.6
994,208 - 14180 mRNA_5812 0.13 -0.2
994,512 - 14180 mRNA_5812 0.23 +0.6

Or see this region's nucleotide sequence