Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5855

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14222 and 14223 are separated by 245 nucleotides14223 and 14224 are separated by 506 nucleotides mRNA_5854: 14222 - K12826 SF3A2, SAP62 splicing factor 3A subunit 2, at 1,093,041 to 1,094,048 14222 mRNA_5855: 14223 - Hypothetical Protein, at 1,094,294 to 1,098,449 14223 mRNA_5856: 14224 - K03357 APC10, DOC1 anaphase-promoting complex subunit 10, at 1,098,956 to 1,099,820 14224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,095,028 - 14223 mRNA_5855 0.18 -0.1
1,095,036 + 14223 mRNA_5855 0.18 +0.7
1,095,066 + 14223 mRNA_5855 0.19 -1.6
1,095,066 + 14223 mRNA_5855 0.19 +0.9
1,095,611 + 14223 mRNA_5855 0.32 -0.0
1,096,919 - 14223 mRNA_5855 0.63 -0.7
1,097,538 + 14223 mRNA_5855 0.78 +0.0
1,098,003 + 14223 mRNA_5855 0.89 +0.6
1,098,091 - +1.0
1,098,249 - -0.5
1,098,263 + +0.4
1,098,556 - +1.2
1,098,577 + +0.2
1,098,976 - -0.7
1,098,983 + -0.6
1,099,109 - 14224 mRNA_5856 0.18 +0.4
1,099,123 - 14224 mRNA_5856 0.19 -0.4
1,099,257 - 14224 mRNA_5856 0.35 -1.4
1,099,289 + 14224 mRNA_5856 0.38 -0.7
1,099,409 + 14224 mRNA_5856 0.52 -0.0
1,099,424 + 14224 mRNA_5856 0.54 -1.3
1,099,424 + 14224 mRNA_5856 0.54 +0.1

Or see this region's nucleotide sequence