Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5873

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14240 and 14241 are separated by 427 nucleotides14241 and 14242 are separated by 834 nucleotides mRNA_5872: 14240 - HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233, at 1,131,493 to 1,135,652 14240 mRNA_5873: 14241 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 1,136,080 to 1,137,305 14241 mRNA_5874: 14242 - K04536 GNB1 guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, at 1,138,140 to 1,139,450 14242

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,135,141 - 14240 mRNA_5872 0.88 +0.7
1,135,310 + +1.1
1,135,316 + +0.5
1,135,432 + +1.5
1,135,731 - +1.8
1,135,840 - +0.5
1,135,863 - +1.0
1,135,881 - +0.0
1,135,893 - -0.1
1,136,040 - +2.5
1,136,040 + +0.4
1,136,203 - 14241 mRNA_5873 0.10 +0.5
1,136,204 + 14241 mRNA_5873 0.10 -1.3
1,136,910 - 14241 mRNA_5873 0.68 -0.6
1,137,353 + +1.0
1,137,497 + -0.0
1,137,823 + +4.0
1,138,065 + -1.0
1,138,244 + +0.2

Or see this region's nucleotide sequence