Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5929

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14296 and 14297 are separated by 266 nucleotides mRNA_5928: 14296 - KOG3472 Predicted small membrane protein, at 1,258,045 to 1,258,837 14296 mRNA_5929: 14297 - Hypothetical Protein, at 1,259,104 to 1,259,543 14297

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,258,278 + 14296 mRNA_5928 0.29 -1.2
1,258,282 - 14296 mRNA_5928 0.30 -1.9
1,258,455 - 14296 mRNA_5928 0.52 -0.5
1,258,557 + 14296 mRNA_5928 0.65 +0.6
1,258,664 - 14296 mRNA_5928 0.78 +0.4
1,259,001 - -0.2
1,259,023 + +2.0
1,259,180 + 14297 mRNA_5929 0.17 -1.2
1,259,302 - 14297 mRNA_5929 0.45 +1.2
1,259,308 - 14297 mRNA_5929 0.46 -0.8
1,259,449 - 14297 mRNA_5929 0.78 +2.0
1,259,456 - 14297 mRNA_5929 0.80 +0.0
1,259,508 - +0.7
1,259,602 - +0.3
1,259,756 + +0.5

Or see this region's nucleotide sequence