Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5948

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14315 and 14316 are separated by 476 nucleotides14316 and 14317 are separated by 869 nucleotides mRNA_5947: 14315 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 1,298,029 to 1,303,055 14315 mRNA_5948: 14316 - HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1,303,532 to 1,306,602 14316 mRNA_5949: 14317 - K01046 E3.1.1.3 triacylglycerol lipase, at 1,307,472 to 1,308,620 14317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,303,239 + +1.4
1,304,960 + 14316 mRNA_5948 0.46 -2.5
1,305,296 - 14316 mRNA_5948 0.57 +1.7
1,305,464 - 14316 mRNA_5948 0.63 +1.6
1,305,477 - 14316 mRNA_5948 0.63 -1.0
1,305,902 + 14316 mRNA_5948 0.77 -0.2
1,306,032 + 14316 mRNA_5948 0.81 -0.9
1,306,202 + 14316 mRNA_5948 0.87 +0.4
1,306,203 + 14316 mRNA_5948 0.87 +0.9
1,306,206 + 14316 mRNA_5948 0.87 -0.5
1,306,221 - 14316 mRNA_5948 0.88 +0.6
1,306,344 - +0.3
1,306,488 - +2.4
1,306,505 - -0.6
1,306,645 - +0.5
1,306,649 - +0.2
1,306,670 + +0.2
1,306,869 + +0.7
1,306,979 + -0.5
1,307,111 - -0.4
1,307,125 - +2.2
1,307,129 + +0.3
1,307,142 + +0.5
1,307,272 - -0.4
1,307,277 - -0.1

Or see this region's nucleotide sequence