Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5958

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14325 and 14326 are separated by 455 nucleotides14326 and 14327 are separated by 496 nucleotides mRNA_5957: 14325 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 1,329,239 to 1,331,004 14325 mRNA_5958: 14326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,331,460 to 1,334,052 14326 mRNA_5959: 14327 - HMMPfam-Domain of unknown function (DUF1793)-PF08760, at 1,334,549 to 1,337,487 14327

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,330,493 + 14325 mRNA_5957 0.71 -0.5
1,330,522 + 14325 mRNA_5957 0.73 +2.5
1,330,655 - 14325 mRNA_5957 0.80 +0.0
1,331,405 + -1.1
1,331,411 + -0.1
1,331,780 + 14326 mRNA_5958 0.12 -0.4
1,331,965 - 14326 mRNA_5958 0.19 -0.2
1,332,084 + 14326 mRNA_5958 0.24 +0.9
1,332,419 - 14326 mRNA_5958 0.37 -0.2
1,332,696 - 14326 mRNA_5958 0.48 +1.1
1,333,256 + 14326 mRNA_5958 0.69 +1.8
1,333,383 + 14326 mRNA_5958 0.74 +0.5
1,333,414 + 14326 mRNA_5958 0.75 +0.3
1,333,627 - 14326 mRNA_5958 0.84 +0.5
1,333,690 + 14326 mRNA_5958 0.86 -0.6
1,333,698 + 14326 mRNA_5958 0.86 +0.3
1,333,728 - 14326 mRNA_5958 0.87 -0.0
1,333,735 - 14326 mRNA_5958 0.88 +0.4
1,333,825 + +0.5
1,333,841 + -0.1
1,333,874 + +0.9
1,333,876 - +4.0
1,333,880 - +0.5
1,333,889 + -0.4
1,333,934 + +0.7
1,333,939 - +0.4
1,333,949 + +2.3
1,334,032 - -0.5
1,334,042 - +0.7
1,334,043 - +0.9
1,334,045 - +0.7
1,334,082 - +0.4
1,334,083 + -0.1
1,334,125 + +0.5
1,334,152 - +0.1
1,334,206 - +2.6
1,334,295 - +0.3
1,334,319 + -0.3
1,334,323 + +1.3
1,334,345 - +2.3
1,334,364 + -1.5
1,334,365 + +0.1
1,334,387 - -1.2
1,334,451 - +1.2
1,334,452 - +0.5
1,334,453 + -0.5
1,334,475 + -0.4
1,334,488 + -1.0
1,334,502 - +0.4
1,334,527 + -0.2
1,334,529 + +0.7
1,334,811 + -0.6
1,334,818 + +1.1
1,334,921 + 14327 mRNA_5959 0.13 +1.5
1,334,991 - 14327 mRNA_5959 0.15 -1.3

Or see this region's nucleotide sequence