Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5970

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14337 and 14338 are separated by 297 nucleotides14338 and 14339 are separated by 185 nucleotides mRNA_5969: 14337 - Hypothetical Protein, at 1,350,863 to 1,351,981 14337 mRNA_5970: 14338 - Hypothetical Protein, at 1,352,279 to 1,353,458 14338 mRNA_5971: 14339 - Hypothetical Protein, at 1,353,644 to 1,354,802 14339

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,351,362 + 14337 mRNA_5969 0.45 +1.0
1,351,365 + 14337 mRNA_5969 0.45 -1.8
1,351,586 - 14337 mRNA_5969 0.65 -0.8
1,351,593 - 14337 mRNA_5969 0.65 -1.5
1,351,620 + 14337 mRNA_5969 0.68 +0.4
1,351,639 + 14337 mRNA_5969 0.69 +2.4
1,351,763 + 14337 mRNA_5969 0.80 +0.3
1,351,781 - 14337 mRNA_5969 0.82 -0.0
1,351,790 + 14337 mRNA_5969 0.83 +1.5
1,351,930 - +1.4
1,352,063 - +3.5
1,352,074 + +2.8
1,352,081 + -0.5
1,352,110 + -0.1
1,352,202 - +0.2
1,352,215 + +0.1
1,352,221 + -0.2
1,352,263 + +0.9
1,352,267 + +0.4
1,352,376 + -0.9
1,352,475 + 14338 mRNA_5970 0.17 +0.1
1,352,520 + 14338 mRNA_5970 0.20 -0.1
1,352,657 - 14338 mRNA_5970 0.32 -0.4
1,352,660 + 14338 mRNA_5970 0.32 +0.6
1,352,682 - 14338 mRNA_5970 0.34 +0.7
1,352,685 + 14338 mRNA_5970 0.34 +0.1
1,352,813 + 14338 mRNA_5970 0.45 +1.1
1,352,814 + 14338 mRNA_5970 0.45 -0.1
1,352,822 + 14338 mRNA_5970 0.46 +1.0
1,352,917 + 14338 mRNA_5970 0.54 -0.2
1,352,961 + 14338 mRNA_5970 0.58 -0.6
1,352,977 - 14338 mRNA_5970 0.59 -1.2
1,353,001 + 14338 mRNA_5970 0.61 +0.6
1,353,423 - +0.6
1,353,425 + -0.6
1,353,454 - -1.3
1,353,563 - +0.2
1,353,566 - +0.6
1,353,707 - -0.7
1,354,014 + 14339 mRNA_5971 0.32 +0.6
1,354,014 - 14339 mRNA_5971 0.32 -0.5
1,354,016 + 14339 mRNA_5971 0.32 -0.6
1,354,020 + 14339 mRNA_5971 0.32 +0.3
1,354,020 + 14339 mRNA_5971 0.32 -0.3
1,354,028 - 14339 mRNA_5971 0.33 +0.3
1,354,056 - 14339 mRNA_5971 0.36 +3.0
1,354,176 + 14339 mRNA_5971 0.46 +0.3
1,354,281 - 14339 mRNA_5971 0.55 +0.0
1,354,282 + 14339 mRNA_5971 0.55 +0.2
1,354,291 + 14339 mRNA_5971 0.56 +0.2
1,354,292 + 14339 mRNA_5971 0.56 -1.2
1,354,447 + 14339 mRNA_5971 0.69 -0.3
1,354,455 - 14339 mRNA_5971 0.70 -0.1

Or see this region's nucleotide sequence