Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5985

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14352 and 14353 are separated by 349 nucleotides14353 and 14354 are separated by 40 nucleotides mRNA_5984: 14352 - Hypothetical Protein, at 1,380,617 to 1,381,762 14352 mRNA_5985: 14353 - Hypothetical Protein, at 1,382,112 to 1,383,280 14353 mRNA_5986: 14354 - Hypothetical Protein, at 1,383,321 to 1,384,747 14354

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,381,118 - 14352 mRNA_5984 0.44 +1.8
1,381,124 + 14352 mRNA_5984 0.44 +2.0
1,381,320 - 14352 mRNA_5984 0.61 -0.3
1,381,680 + -0.3
1,381,738 + +1.6
1,381,741 + +1.2
1,381,866 - +2.1
1,381,880 + +0.0
1,382,005 - +1.0
1,382,176 - +0.7
1,382,342 + 14353 mRNA_5985 0.20 +0.5
1,382,656 + 14353 mRNA_5985 0.47 -0.2
1,382,763 - 14353 mRNA_5985 0.56 +1.1
1,382,763 + 14353 mRNA_5985 0.56 +1.2
1,382,779 + 14353 mRNA_5985 0.57 -0.3
1,382,803 - 14353 mRNA_5985 0.59 -1.6
1,382,916 + 14353 mRNA_5985 0.69 -0.1
1,383,096 + 14353 mRNA_5985 0.84 +0.9
1,383,405 + +0.2
1,383,532 + 14354 mRNA_5986 0.15 +0.3
1,383,693 + 14354 mRNA_5986 0.26 -2.1
1,383,800 - 14354 mRNA_5986 0.34 -0.1
1,383,956 - 14354 mRNA_5986 0.44 -0.2
1,383,956 - 14354 mRNA_5986 0.44 +0.7
1,383,966 + 14354 mRNA_5986 0.45 +0.1
1,383,966 + 14354 mRNA_5986 0.45 +0.4
1,383,979 - 14354 mRNA_5986 0.46 +0.7
1,384,230 + 14354 mRNA_5986 0.64 +0.7
1,384,236 - 14354 mRNA_5986 0.64 +0.4

Or see this region's nucleotide sequence