Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5992

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14359 and 14360 are separated by 350 nucleotides14360 and 14361 are separated by 172 nucleotides mRNA_5991: 14359 - Hypothetical Protein, at 1,398,827 to 1,400,392 14359 mRNA_5992: 14360 - Hypothetical Protein, at 1,400,743 to 1,402,011 14360 mRNA_5993: 14361 - K12847 USP39, SAD1 U4/U6.U5 tri-snRNP-associated protein 2, at 1,402,184 to 1,404,821 14361

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,399,977 + 14359 mRNA_5991 0.73 +0.7
1,400,016 - 14359 mRNA_5991 0.76 +1.0
1,400,597 + -0.5
1,400,908 - 14360 mRNA_5992 0.13 -1.4
1,400,918 - 14360 mRNA_5992 0.14 -1.8
1,401,371 - 14360 mRNA_5992 0.49 +0.5
1,401,386 + 14360 mRNA_5992 0.51 +0.5
1,401,389 - 14360 mRNA_5992 0.51 +0.2
1,401,513 - 14360 mRNA_5992 0.61 +1.2
1,401,821 - 14360 mRNA_5992 0.85 +1.9
1,401,910 + -0.2
1,402,306 + +0.2

Or see this region's nucleotide sequence