Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6055

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14422 and 14423 are separated by 184 nucleotides14423 and 14424 are separated by 602 nucleotides mRNA_6054: 14422 - Hypothetical Protein, at 1,530,562 to 1,531,285 14422 mRNA_6055: 14423 - Hypothetical Protein, at 1,531,470 to 1,536,936 14423 mRNA_6056: 14424 - K13996 EPS1 protein disulfide-isomerase, at 1,537,539 to 1,540,392 14424

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,530,630 + -0.2
1,530,639 - 14422 mRNA_6054 0.11 +0.1
1,530,649 - 14422 mRNA_6054 0.12 +0.8
1,530,666 + 14422 mRNA_6054 0.14 +0.1
1,530,757 - 14422 mRNA_6054 0.27 -0.0
1,530,777 - 14422 mRNA_6054 0.30 -0.4
1,530,923 - 14422 mRNA_6054 0.50 -3.3
1,530,980 - 14422 mRNA_6054 0.58 -0.0
1,531,033 - 14422 mRNA_6054 0.65 -0.2
1,531,040 + 14422 mRNA_6054 0.66 +0.7
1,531,056 + 14422 mRNA_6054 0.68 +0.9
1,531,111 + 14422 mRNA_6054 0.76 -0.7
1,531,118 + 14422 mRNA_6054 0.77 -1.1
1,531,216 + +2.0
1,531,239 + +2.8
1,531,248 - +0.2
1,531,379 - -0.0
1,531,393 + -0.6
1,531,424 + +1.8
1,531,483 - +1.8
1,531,539 + -0.0
1,531,583 + +1.9
1,531,586 - +0.2
1,531,942 - +1.8
1,531,955 + -0.9
1,532,256 - 14423 mRNA_6055 0.14 +1.2
1,532,363 + 14423 mRNA_6055 0.16 +0.6
1,532,415 - 14423 mRNA_6055 0.17 +0.6
1,532,705 - 14423 mRNA_6055 0.23 -0.3
1,532,705 - 14423 mRNA_6055 0.23 +1.0
1,532,747 - 14423 mRNA_6055 0.23 +1.4
1,532,753 + 14423 mRNA_6055 0.23 -0.2
1,532,766 + 14423 mRNA_6055 0.24 -0.1
1,532,797 + 14423 mRNA_6055 0.24 -0.3
1,532,984 + 14423 mRNA_6055 0.28 -0.1
1,533,064 + 14423 mRNA_6055 0.29 +0.2
1,533,079 + 14423 mRNA_6055 0.29 +0.7
1,533,107 + 14423 mRNA_6055 0.30 +0.3
1,533,394 + 14423 mRNA_6055 0.35 +0.2
1,533,465 - 14423 mRNA_6055 0.36 -1.3
1,533,642 - 14423 mRNA_6055 0.40 +0.9
1,533,799 - 14423 mRNA_6055 0.43 +0.7
1,533,882 - 14423 mRNA_6055 0.44 +0.1
1,534,028 - 14423 mRNA_6055 0.47 +1.0
1,534,115 - 14423 mRNA_6055 0.48 -0.3
1,534,134 - 14423 mRNA_6055 0.49 -1.7
1,534,334 + 14423 mRNA_6055 0.52 +0.0
1,534,526 + 14423 mRNA_6055 0.56 +0.2
1,534,667 + 14423 mRNA_6055 0.58 +0.7
1,534,936 + 14423 mRNA_6055 0.63 -1.8
1,534,949 - 14423 mRNA_6055 0.64 +0.5
1,534,988 - 14423 mRNA_6055 0.64 -0.1
1,535,048 - 14423 mRNA_6055 0.65 +0.6
1,535,266 + 14423 mRNA_6055 0.69 -2.0
1,535,307 + 14423 mRNA_6055 0.70 +1.1
1,535,477 - 14423 mRNA_6055 0.73 -1.6
1,535,491 + 14423 mRNA_6055 0.74 +0.7
1,535,503 + 14423 mRNA_6055 0.74 +0.3
1,535,675 + 14423 mRNA_6055 0.77 -0.5
1,535,695 + 14423 mRNA_6055 0.77 +0.0
1,535,695 - 14423 mRNA_6055 0.77 +0.3
1,535,695 + 14423 mRNA_6055 0.77 +0.7
1,535,698 - 14423 mRNA_6055 0.77 +0.1
1,536,253 - 14423 mRNA_6055 0.87 +2.7
1,536,401 - -0.9
1,536,993 + +0.2
1,537,004 - +2.5
1,537,115 + -0.0
1,537,129 - +1.3
1,537,180 + +0.5
1,537,180 + +0.2
1,537,180 + +0.1
1,537,226 + -0.5
1,537,257 - +0.5
1,537,296 - +0.0
1,537,332 - -0.2
1,537,430 + +0.1
1,537,448 + +1.8
1,537,449 - -0.5
1,537,451 - +0.7
1,537,610 + +1.5
1,537,613 - -1.2
1,537,705 - +0.9
1,537,705 - -0.2
1,537,728 - +0.5
1,537,846 + 14424 mRNA_6056 0.11 +0.2
1,537,874 - 14424 mRNA_6056 0.12 -0.0

Or see this region's nucleotide sequence