Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6070

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14437 and 14438 are separated by 163 nucleotides mRNA_6069: 14437 - KOG0198 MEKK and related serine/threonine protein kinases, at 1,567,592 to 1,572,715 14437 mRNA_6070: 14438 - K14552 NAN1, UTP17, WDR75 NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17), at 1,572,879 to 1,575,986 14438

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,572,362 + -1.5
1,572,421 - -0.2
1,572,491 + +3.3
1,572,505 + +2.1
1,572,508 + -1.6
1,572,623 - +0.8
1,572,623 - +1.3
1,572,634 - +0.8
1,572,798 - +0.1
1,572,823 - +0.1
1,572,831 - +1.2
1,575,870 - +1.3
1,576,145 - -0.1
1,576,160 - +0.6
1,576,165 - +0.5
1,576,168 - +0.1
1,576,274 + +0.5
1,576,284 - -0.1
1,576,418 - +0.8
1,576,428 - -1.3
1,576,429 + +0.2
1,576,448 + +0.5
1,576,448 + -0.3
1,576,449 - -1.4
1,576,455 - +1.1
1,576,457 + -0.4
1,576,547 - +1.7
1,576,571 + +2.7
1,576,575 + +1.5
1,576,575 + +0.6
1,576,581 + +2.6
1,576,584 + -0.2
1,576,651 - +1.1
1,576,655 - +1.3
1,576,681 + +0.1
1,576,832 - +0.0
1,576,961 - -0.5

Or see this region's nucleotide sequence